- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
ADN.2: 19 residues within 4Å:- Chain A: L.63, H.64, T.66, Q.68, T.69, D.141, E.203, T.204, K.233, D.237, L.389, L.392, M.396, G.397, H.398, M.403, F.407
- Ligands: NAD.1, NA.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.68, A:T.69, A:T.204, A:K.233, A:K.233, A:H.398
ADN.6: 19 residues within 4Å:- Chain B: L.63, H.64, T.66, Q.68, T.69, D.141, E.203, T.204, K.233, D.237, L.389, L.392, M.396, G.397, H.398, M.403, F.407
- Ligands: NAD.5, NA.7
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:T.66, B:Q.68, B:T.69, B:T.204, B:T.204, B:K.233, B:K.233, B:H.398
ADN.11: 18 residues within 4Å:- Chain C: H.64, T.66, Q.68, T.69, D.141, E.203, T.204, K.233, D.237, L.389, L.392, M.396, G.397, H.398, M.403, F.407
- Ligands: NAD.10, NA.12
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:H.64, C:Q.68, C:E.203, C:T.204, C:K.233, C:K.233, C:H.398
- Water bridges: C:D.141
ADN.16: 18 residues within 4Å:- Chain D: H.64, T.66, Q.68, T.69, D.141, E.203, T.204, K.233, D.237, L.389, L.392, M.396, G.397, H.398, M.403, F.407
- Ligands: NAD.15, NA.17
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:T.66, D:Q.68, D:E.203, D:T.204, D:T.204, D:K.233, D:K.233, D:H.398, D:H.398
- Water bridges: D:D.141
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 6 residues within 4Å:- Chain A: Q.68, M.396, G.397, H.398, P.399
- Ligands: ADN.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.396
- Water bridges: A:Q.68
NA.7: 6 residues within 4Å:- Chain B: Q.68, M.396, G.397, H.398, P.399
- Ligands: ADN.6
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.68
NA.12: 6 residues within 4Å:- Chain C: Q.68, M.396, G.397, H.398, P.399
- Ligands: ADN.11
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.68
- Water bridges: C:Q.94
NA.17: 6 residues within 4Å:- Chain D: Q.68, M.396, G.397, H.398, P.399
- Ligands: ADN.16
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.68, D:H.398
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 5 residues within 4Å:- Chain A: E.416, N.420, Y.426, P.434, T.436
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.420, A:Y.426, A:T.436
PEG.8: 6 residues within 4Å:- Chain A: H.209
- Chain B: I.464, G.465, V.466, K.473, S.474
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.209
PEG.9: 8 residues within 4Å:- Chain A: T.205, H.209, Y.212, D.229
- Chain B: S.474, H.476, Y.477
- Ligands: NAD.1
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.209, A:Y.212, A:Y.212, B:S.474
- Water bridges: A:N.228
PEG.13: 5 residues within 4Å:- Chain C: G.465, V.466, P.471, K.473, S.474
No protein-ligand interaction detected (PLIP)PEG.14: 5 residues within 4Å:- Chain C: M.147, E.171, F.174, R.210, F.349
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manszewski, T. et al., Crystallographic and SAXS studies of S-adenosyl-l-homocysteine hydrolase from Bradyrhizobium elkanii. IUCrJ (2017)
- Release Date
- 2017-05-10
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x ADN: ADENOSINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manszewski, T. et al., Crystallographic and SAXS studies of S-adenosyl-l-homocysteine hydrolase from Bradyrhizobium elkanii. IUCrJ (2017)
- Release Date
- 2017-05-10
- Peptides
- Adenosylhomocysteinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D