SMTL ID : 5m7s.1

Structure of human O-GlcNAc hydrolase with bound transition state analog ThiametG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NHT: (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL

NHT.1: 16 residues within 4Å: Chain A: G.67, F.68, Y.69, K.98, D.174, D.175, C.215, Y.219, T.250, V.254, W.278, N.280, A.283, D.285, Y.286, N.313 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.250, A:W.278 Hydrogen bonds: A:G.67, A:K.98, A:K.98, A:D.174, A:D.174, A:N.313 NHT.2: 16 residues within 4Å: Chain B: G.67, F.68, Y.69, K.98, D.174, D.175, C.215, Y.219, T.250, V.254, W.278, N.280, A.283, D.285, Y.286, N.313 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.219, B:T.250 Hydrogen bonds: B:G.67, B:K.98, B:K.98, B:D.174, B:N.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Structural and functional insight into human O-GlcNAcase. Nat. Chem. Biol. (2017)

Release Date

2017-03-29

Peptides

Protein O-GlcNAcase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein O-GlcNAcase

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