SMTL ID : 5m7t.1

Structure of human O-GlcNAc hydrolase with PugNAc type inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x GDV: (5R,6R,7R,8S)-8-(ACETYLAMINO)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-N-PHENYL-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-2-CARBOXAMIDE(Non-covalent)

GDV.1: 15 residues within 4Å: Chain A: G.67, F.68, Y.69, K.98, D.174, D.175, Y.219, F.223, T.250, V.254, W.278, N.280, D.285, Y.286, N.313 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.219, A:F.223, A:T.250, A:W.278 Hydrogen bonds: A:G.67, A:K.98, A:K.98, A:D.174, A:D.174, A:D.175, A:N.280, A:D.285, A:N.313 GDV.2: 15 residues within 4Å: Chain B: G.67, F.68, Y.69, K.98, D.174, D.175, Y.219, F.223, T.250, V.254, W.278, N.280, D.285, Y.286, N.313 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.219, B:F.223, B:T.250, B:W.278 Hydrogen bonds: B:G.67, B:K.98, B:K.98, B:D.174, B:D.175, B:Y.219, B:N.280, B:N.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roth, C. et al., Structural and functional insight into human O-GlcNAcase. Nat. Chem. Biol. (2017)

Release Date

2017-03-29

Peptides

Protein O-GlcNAcase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein O-GlcNAcase

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