SMTL ID : 5m9f.1

Structure of the two C-terminal domains of bacteriophage K gp144

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: P.141, S.142, H.143, I.259 Chain C: P.141, M.261 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:H.143, A:I.259, C:P.141 Salt bridges: A:H.143 ACT.2: 6 residues within 4Å: Chain A: C.194, K.196 Chain B: C.194, K.196 Chain C: C.194, K.196 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:C.194, B:K.196, C:K.196 Hydrophobic interactions: A:K.196 ACT.3: 5 residues within 4Å: Chain A: A.244, V.245, Q.246 Chain B: R.216, P.222 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.246 Hydrogen bonds: A:Q.246 ACT.5: 8 residues within 4Å: Chain A: Y.83, S.96, C.97, R.98, T.120 Chain C: D.104, H.112, G.113 1 PLIP interactions: 1 interactions with chain C Water bridges: C:G.113 ACT.6: 7 residues within 4Å: Chain B: T.139, P.141, M.261 Chain C: P.141, S.142, H.143, I.259 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:P.141, C:H.143, C:I.259 Salt bridges: C:H.143

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: S.140 Chain B: S.140 Chain C: S.140 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: C:S.140, A:S.140, B:S.140, B:S.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, A. et al., Crystal Structure of a Putative Receptor-Binding Protein of Staphylococcus Virus K. To Be Published

Release Date

2017-12-20

Peptides

ORF68: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

ORF68