SMTL ID : 5m9q.1

Human angiogenin PD variant R95Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.33, R.34 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.33, A:R.34, A:R.34, A:R.34 Salt bridges: A:R.33, A:R.34 SO4.2: 3 residues within 4Å: Chain A: N.50, K.51, R.52 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.15, A:K.51, A:R.52 Water bridges: A:Y.15, A:G.49, A:K.51, A:R.52, A:R.52 Salt bridges: A:R.52 SO4.3: 8 residues within 4Å: Chain A: H.115, L.116, D.117, Q.118, S.119, R.122 Ligands: PEG.5, PEG.7 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.117, A:D.117, A:Q.118, A:S.119 Salt bridges: A:H.115, A:R.122 SO4.4: 4 residues within 4Å: Chain A: D.3, N.4, S.5, R.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.5, A:R.6 Water bridges: A:N.4, A:N.4, A:R.6, A:R.6

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: E.68, N.69, L.70 Ligands: SO4.3 No protein-ligand interaction detected (PLIP) PEG.6: 4 residues within 4Å: Chain A: H.48, G.49, N.50, Q.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.50, A:N.50 Water bridges: A:G.49, A:S.53 PEG.7: 7 residues within 4Å: Chain A: Q.13, H.14, K.41, H.115, L.116, Q.118 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.41, A:L.116 Water bridges: A:H.115, A:L.116

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 3 residues within 4Å: Chain A: S.5, T.8, H.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., Structural insights into human angiogenin variants implicated in Parkinson's disease and Amyotrophic Lateral Sclerosis. Sci Rep (2017)

Release Date

2017-02-22

Peptides

Angiogenin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Angiogenin