SMTL ID : 5mcb.1

Glycogen phosphorylase in complex with chlorogenic acid.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: Y.79, G.123, G.124, W.480, V.556, K.557, K.563, Y.637, R.638, V.639, A.642, G.664, T.665, G.666, K.669 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.79, A:Y.637, A:V.639, A:K.669 Hydrogen bonds: A:T.665, A:G.666 Water bridges: A:Y.79, A:G.124, A:K.557, A:K.563, A:N.667 Salt bridges: A:K.557, A:K.563

1 x CGG: Chlorogenic acid(Non-covalent)

CGG.2: 16 residues within 4Å: Chain A: E.77, G.124, L.125, L.128, N.271, N.273, R.281, H.330, H.366, V.444, N.473, Y.562, E.661, A.662, S.663, G.664 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:H.366 Hydrogen bonds: A:E.77, A:G.124, A:L.125, A:R.281, A:N.473, A:Y.562, A:E.661, A:E.661, A:A.662, A:S.663, A:G.664 Water bridges: A:G.124, A:G.126, A:N.271, A:R.281 Salt bridges: A:H.366 pi-Cation interactions: A:H.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stravodimos, G.A. et al., Affinity Crystallography Reveals the Bioactive Compounds of Industrial Juicing Byproducts of Punica granatum for Glycogen Phosphorylase. Curr Drug Discov Technol (2018)

Release Date

2017-09-20

Peptides

Glycogen phosphorylase, muscle form: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycogen phosphorylase, muscle form

Related Entries With Identical Sequence