SMTL ID : 5mcw.1

New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149 ZN.3: 4 residues within 4Å: Chain B: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.83, B:H.86, B:C.145, B:C.149 ZN.5: 4 residues within 4Å: Chain D: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.83, D:H.86, D:C.145, D:C.149 ZN.7: 4 residues within 4Å: Chain E: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.83, E:H.86, E:C.145, E:C.149

4 x FOR: FORMYL GROUP(Non-covalent)

FOR.2: 3 residues within 4Å: Chain A: R.17, L.18, W.53 No protein-ligand interaction detected (PLIP) FOR.4: 3 residues within 4Å: Chain B: R.17, L.18, W.53 No protein-ligand interaction detected (PLIP) FOR.6: 3 residues within 4Å: Chain D: R.17, L.18, W.53 No protein-ligand interaction detected (PLIP) FOR.8: 3 residues within 4Å: Chain E: R.17, L.18, W.53 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golovenko, D. et al., New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure (2018)

Release Date

2018-06-13

Peptides

Cellular tumor antigen p53: ABDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

Cellular tumor antigen p53

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