SMTL ID : 5mdu.1

Structure of the RNA recognition motif (RRM) of Seb1 from S. pombe.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.02 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.47, S.48, R.67 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: K.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.89, A:K.91 NA.3: 3 residues within 4Å: Chain A: G.29, R.59, R.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.29, A:R.59, A:R.59, A:R.89

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: D.10, K.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.19, A:K.19 GOL.5: 2 residues within 4Å: Chain A: R.6, E.72 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.6, A:R.6, A:E.72 Water bridges: A:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wittmann, S. et al., The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA. Nat Commun (2017)

Release Date

2017-04-12

Peptides

Rpb7-binding protein seb1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rpb7-binding protein seb1