SMTL ID : 5me8.1

N-terminal domain of the human tumor suppressor ING5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: L.47, E.50, Y.51, E.65, R.66, K.69, I.70 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.47, A:K.69 Hydrogen bonds: A:E.50 MPD.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 10 residues within 4Å: Chain A: Y.51, V.55, R.63, L.67 Chain B: T.5, Y.8, L.9, Y.92, V.95, I.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.51 EDO.3: 4 residues within 4Å: Chain A: E.43, I.46, L.47, K.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.43, A:E.43, A:K.69 EDO.4: 6 residues within 4Å: Chain A: K.41, I.44, D.45, Y.74 Chain B: E.10 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.45 EDO.6: 4 residues within 4Å: Chain B: V.64, L.67, Q.68, Q.71 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.71 EDO.7: 5 residues within 4Å: Chain A: Y.74 Chain B: E.10, L.13, D.14 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.74 EDO.8: 4 residues within 4Å: Chain B: Q.86, L.87, M.89, Q.90 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.86, B:Q.90 EDO.9: 4 residues within 4Å: Chain B: D.39, A.42, E.43, I.46 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ormaza, G. et al., The Tumor Suppressor ING5 Is a Dimeric, Bivalent Recognition Molecule of the Histone H3K4me3 Mark. J.Mol.Biol. (2019)

Release Date

2018-03-14

Peptides

Inhibitor of growth protein 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Inhibitor of growth protein 5