SMTL ID : 5mek.1

Sulphotransferase-18 from Arabidopsis thaliana in complex with 3'-phosphoadenosine 5'-phosphate (PAP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.1: 20 residues within 4Å: Chain A: K.68, T.69, G.70, T.71, T.72, W.73, R.152, S.160, Y.218, R.222, C.257, S.258, F.259, L.262, Y.286, F.287, R.288, K.289, G.290 Ligands: EDO.10 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:K.68, A:T.69, A:G.70, A:T.71, A:T.71, A:T.72, A:T.72, A:T.72, A:S.160, A:C.257, A:F.259, A:R.288, A:K.289, A:G.290 Water bridges: A:W.73, A:W.73, A:R.152, A:R.288, A:K.291 Salt bridges: A:K.68, A:R.152, A:R.288 pi-Stacking: A:F.259, A:F.259

22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: K.96, R.97, A.267, K.272, D.273, E.275, N.283 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: T.170, E.171, L.172, G.173 Ligands: EDO.5 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: R.57, V.118, L.119, D.121, K.122, N.124, F.127 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: R.26, L.165, H.166, E.168, T.170, P.174 Ligands: EDO.3 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: F.185, C.186, P.194, Y.195, L.196, I.307, L.310 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: Y.34, I.48, Q.51, E.52 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: L.43, I.108, H.130, Y.192 Ligands: EDO.10 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: F.53, F.54, Q.55, F.110 Ligands: EDO.20 Ligand excluded by PLIP EDO.10: 10 residues within 4Å: Chain A: P.67, K.68, T.71, T.72, H.100, Y.105, H.130, Y.286 Ligands: A3P.1, EDO.8 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: A.80, N.83, R.84, F.87, D.88, D.89, N.92 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: F.79, R.86 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: R.97, E.101, F.102, D.276 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: R.57, S.59, K.122, T.125 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: I.81, A.82, N.83, R.84, S.85, H.238 Ligand excluded by PLIP EDO.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: Y.37, E.134, N.197, L.200, A.201, K.314 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain A: T.3, E.4, F.5, H.49, F.110, P.111, P.114 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain A: F.5, E.6, F.112 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain A: F.110, P.114, L.119, K.120 Ligands: EDO.9 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: P.174, V.175, S.176 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain A: W.151, W.203, F.215, K.217, L.320 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain A: I.108, R.277, G.279, V.280 Ligand excluded by PLIP

5 x POL: N-PROPANOL(Non-covalent)

POL.24: 5 residues within 4Å: Chain A: F.113, P.114, E.115, V.116, D.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.113, A:E.115 POL.25: 1 residues within 4Å: Chain A: R.97 No protein-ligand interaction detected (PLIP) POL.26: 6 residues within 4Å: Chain A: W.25, L.40, M.161, L.165, S.190, G.191 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.40, A:L.165 Hydrogen bonds: A:G.191 POL.27: 3 residues within 4Å: Chain A: Y.206, Q.207, P.210 No protein-ligand interaction detected (PLIP) POL.28: 4 residues within 4Å: Chain A: F.19, P.20, E.33, Y.34 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.19, A:P.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirschmann, F. et al., Structural and biochemical studies of sulphotransferase 18 from Arabidopsis thaliana explain its substrate specificity and reaction mechanism. Sci Rep (2017)

Release Date

2017-07-05

Peptides

Cytosolic sulfotransferase 18: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosolic sulfotransferase 18

Related Entries With Identical Sequence