SMTL ID : 5mfx.1

Zika NS3 helicase:RNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x A- G- A- C- U: RNA (5'-R(P*AP*GP*AP*CP*U)-3')(Non-covalent)

A-G-A-C-U.1: 22 residues within 4Å: Chain A: T.53, R.54, T.73, C.90, A.92, T.93, F.117, D.119, P.192, S.193, V.194, S.215, R.216, T.237, D.238, I.239, L.258, P.260, L.270, D.368, R.426, D.430 Protein-ligand interaction information (PLIP) not available

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: R.151, T.277, H.278, A.306, D.309 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:D.309 Hydrogen bonds: A:H.278 Water bridges: A:A.279, A:A.279 Salt bridges: A:R.151, A:H.278

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 10 residues within 4Å: Chain A: P.24, G.25, A.26, G.27, K.28, T.29, R.30, N.245, R.287, R.290 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.25, A:A.26, A:G.27, A:K.28, A:T.29, A:R.30, A:N.245, A:R.290 Water bridges: A:G.25 Salt bridges: A:K.28, A:R.287, A:R.290, A:R.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenkins, H.T. et al., How Zika virus NS3 helicase grips the firstnucleotide of the leading RNA strand. To Be Published

Release Date

2017-01-11

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

Related Entries With Identical Sequence