SMTL ID : 5mgs.1 (3 other biounits)

Human receptor NKR-P1 in deglycosylated form, extracellular domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: L.45, I.46, R.47, W.81, N.83, S.85 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:I.46, A:S.85, A:S.85 Water bridges: A:R.47, A:N.83, A:N.83, A:S.85, A:S.85 NAG.2: 9 residues within 4Å: Chain A: W.29, N.71, K.80, I.82, C.103, C.116 Chain B: N.30, N.31, A.34 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.30, B:N.30, A:N.71, A:K.80 Water bridges: B:N.31, A:F.72, A:F.72, A:K.80 NAG.3: 7 residues within 4Å: Chain B: L.45, I.46, R.47, W.81, N.83, S.85, N.88 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:I.46, B:S.85, B:S.85, B:N.88 Water bridges: B:N.83, B:N.83, B:N.88 NAG.4: 9 residues within 4Å: Chain A: N.30, N.31, A.34 Chain B: W.29, N.71, W.81, I.82, N.101, C.116 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.71, A:N.30, A:N.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaha, J. et al., Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse. Nat Commun (2022)

Release Date

2018-05-23

Peptides

Killer cell lectin-like receptor subfamily B member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Killer cell lectin-like receptor subfamily B member 1

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