- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x PBG: 3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID(Non-covalent)
- 24 x ZN: ZINC ION(Non-covalent)
ZN.2: 2 residues within 4Å:- Chain A: E.40, H.84
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.40, A:E.40, A:H.84
ZN.3: 4 residues within 4Å:- Chain A: C.120, C.122, C.130
- Ligands: PBG.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:C.120, A:C.122, A:C.130
ZN.4: 2 residues within 4Å:- Chain A: E.232, D.236
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:E.232, H2O.1, H2O.2, H2O.3, H2O.4, H2O.10
ZN.9: 2 residues within 4Å:- Chain B: E.40, H.84
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.40, B:E.40, B:H.84
ZN.10: 4 residues within 4Å:- Chain B: C.120, C.122, C.130
- Ligands: PBG.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:C.120, B:C.122, B:C.130
ZN.11: 2 residues within 4Å:- Chain B: E.232, D.236
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:E.232, H2O.14, H2O.14, H2O.15, H2O.16, H2O.22
ZN.16: 2 residues within 4Å:- Chain C: E.40, H.84
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.40, C:E.40, C:H.84
ZN.17: 4 residues within 4Å:- Chain C: C.120, C.122, C.130
- Ligands: PBG.15
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:C.120, C:C.122, C:C.130
ZN.18: 2 residues within 4Å:- Chain C: E.232, D.236
6 PLIP interactions:1 interactions with chain C, 5 Ligand-Water interactions- Metal complexes: C:E.232, H2O.26, H2O.27, H2O.28, H2O.29, H2O.35
ZN.23: 2 residues within 4Å:- Chain D: E.40, H.84
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.40, D:E.40, D:H.84
ZN.24: 4 residues within 4Å:- Chain D: C.120, C.122, C.130
- Ligands: PBG.22
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:C.120, D:C.122, D:C.130
ZN.25: 2 residues within 4Å:- Chain D: E.232, D.236
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:E.232, H2O.39, H2O.40, H2O.41, H2O.41, H2O.47
ZN.30: 2 residues within 4Å:- Chain E: E.40, H.84
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:E.40, E:E.40, E:H.84
ZN.31: 4 residues within 4Å:- Chain E: C.120, C.122, C.130
- Ligands: PBG.29
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:C.120, E:C.122, E:C.130
ZN.32: 2 residues within 4Å:- Chain E: E.232, D.236
6 PLIP interactions:1 interactions with chain E, 5 Ligand-Water interactions- Metal complexes: E:E.232, H2O.51, H2O.52, H2O.53, H2O.54, H2O.60
ZN.37: 2 residues within 4Å:- Chain F: E.40, H.84
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:E.40, F:E.40, F:H.84
ZN.38: 4 residues within 4Å:- Chain F: C.120, C.122, C.130
- Ligands: PBG.36
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:C.120, F:C.122, F:C.130
ZN.39: 2 residues within 4Å:- Chain F: E.232, D.236
6 PLIP interactions:1 interactions with chain F, 5 Ligand-Water interactions- Metal complexes: F:E.232, H2O.64, H2O.65, H2O.66, H2O.67, H2O.73
ZN.44: 2 residues within 4Å:- Chain G: E.40, H.84
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:E.40, G:E.40, G:H.84
ZN.45: 4 residues within 4Å:- Chain G: C.120, C.122, C.130
- Ligands: PBG.43
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:C.120, G:C.122, G:C.130
ZN.46: 2 residues within 4Å:- Chain G: E.232, D.236
6 PLIP interactions:1 interactions with chain G, 5 Ligand-Water interactions- Metal complexes: G:E.232, H2O.77, H2O.77, H2O.78, H2O.79, H2O.85
ZN.51: 2 residues within 4Å:- Chain H: E.40, H.84
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:E.40, H:E.40, H:H.84
ZN.52: 4 residues within 4Å:- Chain H: C.120, C.122, C.130
- Ligands: PBG.50
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:C.120, H:C.122, H:C.130
ZN.53: 2 residues within 4Å:- Chain H: E.232, D.236
6 PLIP interactions:1 interactions with chain H, 5 Ligand-Water interactions- Metal complexes: H:E.232, H2O.89, H2O.90, H2O.91, H2O.92, H2O.98
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 4 residues within 4Å:- Chain A: L.26, L.295, E.296
- Chain G: M.224
Ligand excluded by PLIPGOL.6: 7 residues within 4Å:- Chain A: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain A: A.197, S.199, D.215, R.216, K.217
- Chain G: K.292
Ligand excluded by PLIPGOL.12: 4 residues within 4Å:- Chain B: L.26, L.295, E.296
- Chain H: M.224
Ligand excluded by PLIPGOL.13: 7 residues within 4Å:- Chain B: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain B: A.197, S.199, D.215, R.216, K.217
- Chain H: K.292
Ligand excluded by PLIPGOL.19: 4 residues within 4Å:- Chain C: L.26, L.295, E.296
- Chain E: M.224
Ligand excluded by PLIPGOL.20: 7 residues within 4Å:- Chain C: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.21: 6 residues within 4Å:- Chain C: A.197, S.199, D.215, R.216, K.217
- Chain E: K.292
Ligand excluded by PLIPGOL.26: 4 residues within 4Å:- Chain D: L.26, L.295, E.296
- Chain F: M.224
Ligand excluded by PLIPGOL.27: 7 residues within 4Å:- Chain D: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.28: 6 residues within 4Å:- Chain D: A.197, S.199, D.215, R.216, K.217
- Chain F: K.292
Ligand excluded by PLIPGOL.33: 4 residues within 4Å:- Chain C: M.224
- Chain E: L.26, L.295, E.296
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain E: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain C: K.292
- Chain E: A.197, S.199, D.215, R.216, K.217
Ligand excluded by PLIPGOL.40: 4 residues within 4Å:- Chain D: M.224
- Chain F: L.26, L.295, E.296
Ligand excluded by PLIPGOL.41: 7 residues within 4Å:- Chain F: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.42: 6 residues within 4Å:- Chain D: K.292
- Chain F: A.197, S.199, D.215, R.216, K.217
Ligand excluded by PLIPGOL.47: 4 residues within 4Å:- Chain A: M.224
- Chain G: L.26, L.295, E.296
Ligand excluded by PLIPGOL.48: 7 residues within 4Å:- Chain G: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.49: 6 residues within 4Å:- Chain A: K.292
- Chain G: A.197, S.199, D.215, R.216, K.217
Ligand excluded by PLIPGOL.54: 4 residues within 4Å:- Chain B: M.224
- Chain H: L.26, L.295, E.296
Ligand excluded by PLIPGOL.55: 7 residues within 4Å:- Chain H: E.290, E.291, F.313, D.316, L.317, K.320, I.322
Ligand excluded by PLIPGOL.56: 6 residues within 4Å:- Chain B: K.292
- Chain H: A.197, S.199, D.215, R.216, K.217
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mills-Davies, N. et al., Structural studies of substrate and product complexes of 5-aminolaevulinic acid dehydratase from humans, Escherichia coli and the hyperthermophile Pyrobaculum calidifontis. Acta Crystallogr D Struct Biol (2017)
- Release Date
- 2016-12-07
- Peptides
- Delta-aminolevulinic acid dehydratase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x PBG: 3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID(Non-covalent)
- 24 x ZN: ZINC ION(Non-covalent)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mills-Davies, N. et al., Structural studies of substrate and product complexes of 5-aminolaevulinic acid dehydratase from humans, Escherichia coli and the hyperthermophile Pyrobaculum calidifontis. Acta Crystallogr D Struct Biol (2017)
- Release Date
- 2016-12-07
- Peptides
- Delta-aminolevulinic acid dehydratase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A