SMTL ID : 5mji.1

Crystal Structure of RosB with bound intermediate OHC-RP (8-demethyl-8-formylriboflavin-5'-phosphate)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x 7O6: [(2~{S},3~{R},4~{R})-5-[8-methanoyl-7-methyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-ium-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate(Non-covalent)

7O6.1: 18 residues within 4Å: Chain A: T.11, R.13, S.19, Q.20, T.21, P.90, I.91, T.92, L.93, N.94, C.132, G.133, N.134, E.135, D.136 Chain B: Y.240 Chain D: E.105, N.108 24 PLIP interactions: 20 interactions with chain A, 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: A:T.11, A:T.11, A:T.11, A:Q.20, A:T.21, A:T.21, A:I.91, A:L.93, A:N.94, A:N.134, A:E.135, A:D.136, A:D.136 Water bridges: A:L.12, A:R.13, A:R.13, A:T.92, A:G.133, A:N.134 Salt bridges: A:R.13 Hydrophobic interactions: B:Y.240, D:N.108 pi-Stacking: B:Y.240, B:Y.240 7O6.2: 18 residues within 4Å: Chain A: Y.240 Chain B: T.11, R.13, S.19, Q.20, T.21, P.90, I.91, T.92, L.93, N.94, C.132, G.133, N.134, E.135, D.136 Chain C: E.105, N.108 24 PLIP interactions: 19 interactions with chain B, 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: B:T.11, B:T.11, B:T.11, B:Q.20, B:T.21, B:I.91, B:L.93, B:N.94, B:N.134, B:E.135, B:D.136, B:D.136, A:Y.240 Water bridges: B:L.12, B:R.13, B:R.13, B:R.13, B:G.133, B:N.134 Salt bridges: B:R.13 Hydrophobic interactions: A:Y.240, C:N.108 pi-Stacking: A:Y.240, A:Y.240 7O6.3: 18 residues within 4Å: Chain B: E.105, N.108 Chain C: T.11, R.13, S.19, Q.20, T.21, P.90, I.91, T.92, L.93, N.94, C.132, G.133, N.134, E.135, D.136 Chain D: Y.240 24 PLIP interactions: 20 interactions with chain C, 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: C:T.11, C:T.11, C:T.11, C:Q.20, C:T.21, C:T.21, C:I.91, C:L.93, C:N.94, C:N.134, C:E.135, C:D.136, C:D.136 Water bridges: C:L.12, C:R.13, C:R.13, C:T.92, C:G.133, C:N.134 Salt bridges: C:R.13 Hydrophobic interactions: B:N.108, D:Y.240 pi-Stacking: D:Y.240, D:Y.240 7O6.4: 18 residues within 4Å: Chain A: E.105, N.108 Chain C: Y.240 Chain D: T.11, R.13, S.19, Q.20, T.21, P.90, I.91, T.92, L.93, N.94, C.132, G.133, N.134, E.135, D.136 24 PLIP interactions: 19 interactions with chain D, 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: D:T.11, D:T.11, D:T.11, D:Q.20, D:T.21, D:I.91, D:L.93, D:N.94, D:N.134, D:E.135, D:D.136, D:D.136, C:Y.240 Water bridges: D:L.12, D:R.13, D:R.13, D:R.13, D:G.133, D:N.134 Salt bridges: D:R.13 Hydrophobic interactions: C:Y.240, A:N.108 pi-Stacking: C:Y.240, C:Y.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Konjik, V. et al., The Crystal Structure of RosB: Insights into the Reaction Mechanism of the First Member of a Family of Flavodoxin-like Enzymes. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2016-12-28

Peptides

BRAMP domain protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

BRAMP domain protein

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