SMTL ID : 5mku.1

Crystal structure of the Retinoid X Receptor alpha in complex with synthetic honokiol derivative 4 and a fragment of the TIF2 co-activator.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-2-2-mer

Ligands

2 x J57: (~{E})-3-[4-oxidanyl-3-(3-propan-2-ylphenyl)phenyl]prop-2-enoic acid(Non-covalent)

J57.1: 21 residues within 4Å: Chain A: I.40, A.43, A.44, Q.47, W.77, N.78, L.81, I.82, F.85, R.88, I.96, L.98, A.99, V.104, V.114, I.117, F.118, V.121, C.204, H.207, L.208 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.40, A:I.40, A:A.44, A:L.81, A:F.85, A:F.85, A:F.85, A:V.121, A:L.208 Hydrogen bonds: A:N.78, A:A.99 Water bridges: A:F.85 Salt bridges: A:R.88 J57.2: 21 residues within 4Å: Chain C: I.40, A.43, A.44, Q.47, W.77, N.78, L.81, I.82, F.85, R.88, I.96, L.98, A.99, V.104, V.114, I.117, F.118, V.121, C.204, H.207, L.208 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:I.40, C:I.40, C:A.44, C:L.81, C:F.85, C:F.85, C:F.85, C:V.121, C:L.208 Hydrogen bonds: C:N.78, C:A.99 Water bridges: C:F.85 Salt bridges: C:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheepstra, M. et al., Ligand Dependent Switch from RXR Homo- to RXR-NURR1 Heterodimerization. ACS Chem Neurosci (2017)

Release Date

2017-11-08

Peptides

Retinoic acid receptor RXR-alpha: AC
HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER