SMTL ID : 5mlr.1

Plantago Major multifunctional oxidoreductase V150M mutant in complex with citral and NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.167, R.168, K.169, Y.201 Ligands: NAP.6 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: G.167, R.168, K.169, Y.201 Ligands: NAP.12 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: D.274, R.391 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.276, A:R.391, A:S.399 NA.3: 3 residues within 4Å: Chain A: F.304, K.305, H.308 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.305, A:H.308 NA.8: 2 residues within 4Å: Chain B: D.274, R.391 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.274 Water bridges: B:D.276, B:D.276 NA.9: 3 residues within 4Å: Chain B: F.304, K.305, H.308 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.305, B:H.308 Water bridges: B:V.303, A:D.185, A:P.186

4 x GRQ: Geranaldehyde(Non-covalent)

GRQ.4: 10 residues within 4Å: Chain A: K.169, F.175, I.178, N.227, M.237, F.365, A.368, V.369, I.372 Ligands: GRQ.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.169, A:I.178, A:F.365, A:A.368, A:V.369, A:I.372 GRQ.5: 13 residues within 4Å: Chain A: K.169, M.172, F.175, I.178, N.227, M.237, F.365, A.368, V.369, I.372, C.374, P.375 Ligands: GRQ.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.169, A:I.178, A:A.368, A:I.372, A:I.372 GRQ.10: 10 residues within 4Å: Chain B: K.169, F.175, I.178, N.227, M.237, F.365, A.368, V.369, I.372 Ligands: GRQ.11 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:K.169, B:I.178, B:F.365, B:A.368, B:V.369, B:I.372 GRQ.11: 13 residues within 4Å: Chain B: K.169, M.172, F.175, I.178, N.227, M.237, F.365, A.368, V.369, I.372, C.374, P.375 Ligands: GRQ.10 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:K.169, B:I.178, B:A.368, B:I.372, B:I.372

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.6: 30 residues within 4Å: Chain A: G.55, V.56, T.57, G.58, I.59, V.60, A.84, R.85, R.86, C.102, D.103, I.104, S.105, V.126, T.127, W.128, M.144, Q.165, T.166, G.167, F.200, Y.201, P.225, G.226, I.228, S.235, M.236, M.237, F.365 Ligands: CL.1 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:P.225, A:I.228, A:I.228 Hydrogen bonds: A:G.55, A:T.57, A:T.57, A:I.59, A:V.60, A:R.85, A:R.86, A:D.103, A:I.104, A:S.105, A:T.127, A:Q.165, A:Q.165, A:I.228, A:M.236, A:M.237 Water bridges: A:R.85, A:R.85, A:K.169, A:Y.201, A:Y.234 Salt bridges: A:R.85, A:R.86 NAP.12: 30 residues within 4Å: Chain B: G.55, V.56, T.57, G.58, I.59, V.60, A.84, R.85, R.86, C.102, D.103, I.104, S.105, V.126, T.127, W.128, M.144, Q.165, T.166, G.167, F.200, Y.201, P.225, G.226, I.228, S.235, M.236, M.237, F.365 Ligands: CL.7 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:P.225, B:I.228, B:I.228 Hydrogen bonds: B:G.55, B:T.57, B:I.59, B:V.60, B:R.85, B:R.86, B:D.103, B:D.103, B:I.104, B:S.105, B:T.127, B:Q.165, B:Q.165, B:Y.201, B:I.228, B:M.236, B:M.237 Water bridges: B:T.57, B:T.57, B:R.85, B:K.169, B:Y.201, B:Y.234 Salt bridges: B:R.85, B:R.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellows, R. et al., A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily. Sci Rep (2018)

Release Date

2018-08-01

Peptides

Progesterone 5-beta-reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Progesterone 5-beta-reductase

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