SMTL ID : 5mlu.1

Crystal structure of the PFV GAG CBS bound to a mononucleosome

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-2-1-1-1-mer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 1 residues within 4Å: Chain A: D.39 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.39, H2O.1, H2O.1, H2O.3 MN.2: 1 residues within 4Å: Chain J: A.39 No protein-ligand interaction detected (PLIP) MN.3: 1 residues within 4Å: Chain J: A.1 No protein-ligand interaction detected (PLIP) MN.4: 2 residues within 4Å: Chain K: G.99, G.100 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lesbats, P. et al., Structural basis for spumavirus GAG tethering to chromatin. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-05-10

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B: D
Histone H2B: H
PFV GAG peptide: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

I
M

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B

Histone H2B

PFV GAG peptide

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