SMTL ID : 5mm1.1

Dolichyl phosphate mannose synthase in complex with GDP and dolichyl phosphate mannose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 12 residues within 4Å: Chain A: P.30, T.31, Y.32, E.34, V.59, D.61, G.90, L.91, D.111, A.112, K.200 Ligands: MJC.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.31, A:Y.32, A:E.34, A:V.59, A:D.61, A:D.61, A:G.90, A:G.90, A:A.112 Salt bridges: A:D.61

1 x MJC: dolichyl phosphate mannose(Non-covalent)

MJC.2: 25 residues within 4Å: Chain A: D.111, H.116, R.139, W.149, R.153, I.156, S.157, G.159, A.160, M.162, V.163, A.167, V.178, S.179, G.180, K.200, F.221, I.236, Y.239, L.240, M.247, L.358, G.361, V.362 Ligands: GDP.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.156, A:A.160, A:V.163, A:I.236, A:I.236, A:I.236, A:Y.239, A:L.240, A:V.362 Hydrogen bonds: A:D.111, A:H.116, A:V.178, A:S.179, A:G.180, A:K.200 Salt bridges: A:R.139, A:R.139, A:R.153, A:K.200, A:K.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandini, R. et al., Structural basis for dolichylphosphate mannose biosynthesis. Nat Commun (2017)

Release Date

2017-08-09

Peptides

Dolichol monophosphate mannose synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Dolichol monophosphate mannose synthase

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