SMTL ID : 5mm4.1

Ustilago maydis kinesin-5 motor domain in the AMPPNP state bound to microtubules

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: G.114, K.115, T.116, H.117 Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: D.98, T.145 Ligands: GTP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.145

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 19 residues within 4Å: Chain A: R.11, V.12, R.13, A.16, G.112, T.113, G.114, K.115, T.116, H.117, N.244, Q.246, S.247, S.248, D.280, L.281, A.282, G.283 Ligands: MG.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.11, A:R.11, A:G.114, A:K.115, A:K.115, A:K.115, A:T.116, A:H.117, A:N.244, A:Q.246, A:Q.246, A:S.248, A:S.248, A:D.280, A:G.283

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.3: 22 residues within 4Å: Chain B: G.10, Q.11, A.12, Q.15, D.98, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228 Chain C: L.246, K.252 Ligands: MG.4 24 PLIP interactions: 22 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:Q.11, B:Q.11, B:A.12, B:D.98, B:A.100, B:N.101, B:S.140, B:G.143, B:G.144, B:T.145, B:T.145, B:G.146, B:T.179, B:T.179, B:E.183, B:N.206, B:N.228, B:N.228, B:N.228 pi-Stacking: B:Y.224, B:Y.224 pi-Cation interactions: B:Y.224 Salt bridges: C:K.252, C:K.252

1 x TA1: TAXOL(Non-covalent)

TA1.5: 12 residues within 4Å: Chain C: V.23, E.27, L.217, H.227, A.231, S.234, F.270, P.272, T.274, P.358, R.359, L.361 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:V.23, C:V.23, C:L.217, C:A.231, C:F.270, C:F.270, C:T.274, C:P.358 Hydrogen bonds: C:T.274, C:R.359

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.6: 13 residues within 4Å: Chain C: G.10, Q.11, C.12, N.99, S.138, G.140, G.141, G.142, T.143, G.144, N.204, Y.222, N.226 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:Q.11, C:Q.11, C:C.12, C:S.138, C:G.141, C:G.142, C:T.143, C:T.143, C:T.143, C:G.144, C:N.204, C:N.226, C:N.226, C:N.226 pi-Stacking: C:Y.222, C:Y.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Loeffelholz, O. et al., Cryo-EM structure of the Ustilago maydis kinesin-5 motor domain bound to microtubules. J.Struct.Biol. (2019)

Release Date

2018-06-27

Peptides

kinesin-5: A
Tubulin alpha-1A chain: B
Tubulin beta chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
A

C
B

kinesin-5

Tubulin alpha-1A chain

Tubulin beta chain

Related Entries With Identical Sequence