SMTL ID : 5mmv.1

Crystal structure of human Caspase-1 with 2-((2-naphthoyl)-L-valyl)-4-hydroxy-N-((3S)-2-hydroxy-5-oxotetrahydrofuran-3-yl)-2-azabicyclo[2.2.2]octane-3-carboxamide (Compound 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x WE0: (3~{S})-3-[[(3~{S})-2-[(2~{S})-3-methyl-2-(naphthalen-2-ylcarbonylamino)butanoyl]-4-oxidanyl-2-azabicyclo[2.2.2]octan-3-yl]carbonylamino]-4-oxidanyl-butanoic acid(Covalent)

WE0.1: 11 residues within 4Å: Chain A: R.61, S.118, H.119, Q.165, C.167 Chain B: V.23, S.24, W.25, R.26, H.27, R.68 13 PLIP interactions: 5 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:Q.165, A:C.167, B:S.24, B:R.26, B:R.26 Water bridges: A:G.120 Salt bridges: A:R.61, A:H.119, B:R.26 Hydrophobic interactions: B:W.25, B:W.25, B:H.27 pi-Stacking: B:H.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brethon, A. et al., Crystal structure of human Caspase-1 with 2-((2-naphthoyl)-L-valyl)-4-hydroxy-N-((3S)-2-hydroxy-5-oxotetrahydrofuran-3-yl)-2-azabicyclo[2.2.2]octane-3-carboxamide (Compound 1). To Be Published

Release Date

2017-12-20

Peptides

Caspase-1: A
Caspase-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Caspase-1

Caspase-1

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