SMTL ID : 5mmy.1 (1 other biounit)

Crystal structure of OXA10 with HEPES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 10 residues within 4Å: Chain A: S.49, M.81, S.97, V.99, K.187, T.188, G.189, F.190, S.191, R.232 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.49, A:S.97, A:T.188 Water bridges: A:F.190, A:F.190 Salt bridges: A:K.187, A:R.232

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: T.89, R.91 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: K.120, F.121, S.122, E.150, F.151, S.154, L.160 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.120, A:E.150, A:S.154 GOL.4: 5 residues within 4Å: Chain A: E.61, T.62, R.113, K.116, Y.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.113, A:K.116, A:K.116 GOL.5: 2 residues within 4Å: Chain A: A.80, M.81 No protein-ligand interaction detected (PLIP) GOL.6: 6 residues within 4Å: Chain A: A.179, P.180, E.181, Y.182, E.209, E.211 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.179, A:Y.182, A:E.211 Water bridges: A:E.209, A:E.209

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: T.62, G.63, V.64, R.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.62 Water bridges: A:R.113

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain A: R.79, A.80, W.84, P.100 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lohans, C.T. et al., (13)C-Carbamylation as a mechanistic probe for the inhibition of class D beta-lactamases by avibactam and halide ions. Org. Biomol. Chem. (2017)

Release Date

2017-07-12

Peptides

Beta-lactamase OXA-10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase OXA-10

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