SMTL ID : 5mr5.1

Ligand-receptor complex.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.63, R.65 Chain B: R.63, R.65 Ligand excluded by PLIP SO4.2: 6 residues within 4Å: Chain A: R.54, R.63, V.64, R.65, A.66, Q.67 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: R.6, L.10, R.11, E.12 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain B: R.54, R.63, V.64, R.65, A.66, Q.67 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: R.56 Chain B: R.16, S.18, E.19 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain B: R.6, R.11, E.12 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain B: R.6, P.7 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: R.51, R.54, Q.55 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain C: A.131, S.132 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain C: P.66, S.67 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain C: L.117, R.121 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain C: R.130 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain C: N.50, R.52 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain C: L.24, N.25, D.26 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain C: D.80, Q.81 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain D: L.24, N.25, D.26 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain D: Q.79, D.80, Q.81 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain D: L.117, R.121 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain D: R.88, Q.89, S.94, E.98 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 6 residues within 4Å: Chain B: E.76, D.77, E.78, R.97 Chain D: K.29, K.30 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:D.77, B:E.78, B:E.78, D:K.29 Water bridges: B:R.33 GOL.17: 5 residues within 4Å: Chain A: E.76, D.77, R.97 Chain C: K.29, K.30 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:D.77, A:R.97, C:K.29 Water bridges: A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandmark, J. et al., Structure and biophysical characterization of the human full-length neurturin-GFRa2 complex: A role for heparan sulfate in signaling. J. Biol. Chem. (2018)

Release Date

2018-01-17

Peptides

Neurturin: AB
GDNF family receptor alpha-2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Neurturin

GDNF family receptor alpha-2

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