SMTL ID : 5mr8.1

Crystal structure of TRIM33 PHD-Bromodomain isoform B in complex with H3K9ac histone peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- LYS- GLN- THR- ALA- ARG- ALY: Histone H3(Non-covalent)

ALA-ARG-THR-LYS-GLN-THR-ALA-ARG-ALY.1: 19 residues within 4Å: Chain A: N.7, E.8, D.9, W.10, N.16, G.17, G.18, D.19, L.20, L.21, C.22, C.23, E.24, H.31, F.42, P.43, S.44, G.45, D.46 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.42 Hydrogen bonds: A:N.7, A:N.7, A:E.8, A:D.9, A:N.16, A:G.17, A:G.17, A:G.18, A:G.18, A:L.20, A:L.20, A:C.22, A:E.24, A:E.24, A:E.24, A:G.45

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.11, C.14, H.31, C.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:H.31, A:C.34 ZN.3: 4 residues within 4Å: Chain A: C.23, C.26, C.49, C.52 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.23, A:C.49, A:C.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tallant, C. et al., Crystal structure of TRIM33 PHD-Bromodomain isoform B in complex with H3K9ac histone peptide. To Be Published

Release Date

2018-01-17

Peptides

E3 ubiquitin-protein ligase TRIM33: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM33

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