SMTL ID : 5mrh.1

Crystal structure of the Vps10p domain of human sortilin/NTS3 in complex with Triazolone 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: A.278, A.279, N.280, N.329, T.331, Y.337 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.281 NAG-NAG.2: 10 residues within 4Å: Chain A: E.71, D.72, Y.73, K.75, R.502, S.503, M.504, N.505, D.526, R.578 No protein-ligand interaction detected (PLIP)

1 x Q9Z: 3-(3-methylbutyl)-4~{H}-1,2,3-triazol-5-one(Non-covalent)

Q9Z.3: 9 residues within 4Å: Chain A: Y.227, S.228, F.237, A.238, S.239, R.248, I.250, F.273, Y.274 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.237, A:I.250 Hydrogen bonds: A:S.239, A:R.248, A:Y.274

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 4 residues within 4Å: Chain A: V.35, T.493, W.509, W.520 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andersen, J.L. et al., The identification of novel acid isostere based inhibitors of the VPS10P family sorting receptor Sortilin. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-05-17

Peptides

Sortilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sortilin

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