SMTL ID : 5mrn.1

Arabidopsis thaliana IspD Glu258Ala Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 2 residues within 4Å: Chain A: T.212, D.216 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.216 K.2: 5 residues within 4Å: Chain A: S.43, M.45, V.48, D.71, V.72 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.43, A:M.45 K.6: 2 residues within 4Å: Chain B: T.212, D.216 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.216 K.7: 5 residues within 4Å: Chain B: S.43, M.45, V.48, D.71, V.72 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.43, B:M.45

6 x CD: CADMIUM ION(Non-covalent)

CD.3: 2 residues within 4Å: Chain A: E.64, E.67 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.64, A:E.67, H2O.3 CD.4: 1 residues within 4Å: Chain A: E.93 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.93, H2O.2, H2O.4 CD.5: 2 residues within 4Å: Chain A: E.47, E.117 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.47, A:E.47, A:E.117, A:E.117, H2O.4 CD.8: 2 residues within 4Å: Chain B: E.64, E.67 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.64, B:E.67, H2O.6 CD.9: 1 residues within 4Å: Chain B: E.93 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.93, H2O.5, H2O.7 CD.10: 2 residues within 4Å: Chain B: E.47, E.117 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.47, B:E.47, B:E.117, B:E.117, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schwab, A. et al., Mechanism of Allosteric Inhibition of the Enzyme IspD by Three Different Classes of Ligands. ACS Chem. Biol. (2017)

Release Date

2017-07-19

Peptides

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic

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