SMTL ID : 5mrq.1

Arabidopsis thaliana IspD Asp262Ala Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 2 residues within 4Å: Chain A: L.218, E.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.221 TRS.6: 2 residues within 4Å: Chain B: L.218, E.221 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.221

8 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain A: E.64, E.67 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.64, A:E.67, A:E.67, H2O.1, H2O.2 CD.3: 1 residues within 4Å: Chain A: E.93 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.93, A:E.93, H2O.2 CD.4: 2 residues within 4Å: Chain A: E.47, E.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.47, A:E.47, A:E.117, H2O.2, H2O.3 CD.5: 2 residues within 4Å: Chain A: T.212, D.216 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.216, A:D.216, H2O.3 CD.7: 2 residues within 4Å: Chain B: E.64, E.67 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.64, B:E.67, B:E.67, H2O.4, H2O.4 CD.8: 1 residues within 4Å: Chain B: E.93 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.93, B:E.93, H2O.5 CD.9: 2 residues within 4Å: Chain B: E.47, E.117 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.47, B:E.47, B:E.117, H2O.5, H2O.5 CD.10: 2 residues within 4Å: Chain B: T.212, D.216 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.216, B:D.216, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schwab, A. et al., Mechanism of Allosteric Inhibition of the Enzyme IspD by Three Different Classes of Ligands. ACS Chem. Biol. (2017)

Release Date

2017-07-19

Peptides

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic