SMTL ID : 5ms5.1 (1 other biounit)

Low-salt structure of RavZ LIR2-fused human LC3B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Q.44, H.45, P.46, T.47, K.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.47, A:T.47 Salt bridges: A:H.45, A:K.48 SO4.2: 5 residues within 4Å: Chain A: F.25, R.28, R.29, K.69 Ligands: GOL.3 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.29, A:R.29, A:R.29, A:K.69 Salt bridges: A:R.28, A:R.29, A:K.69

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: R.28, D.66, K.67, T.68, K.69 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.66, A:T.68, A:K.69, A:K.69, A:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, A. et al., Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins. Elife (2017)

Release Date

2017-04-19

Peptides

RavZ,Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RavZ,Microtubule-associated proteins 1A/1B light chain 3B

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