SMTL ID : 5ms7.1

Crystal structure of the legionella pneumophila effector protein RavZ_20-502

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x BA: BARIUM ION(Non-covalent)

BA.1: 4 residues within 4Å: Chain A: V.118, D.120, D.123 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.118 BA.2: 1 residues within 4Å: Chain A: E.212 No protein-ligand interaction detected (PLIP) BA.6: 4 residues within 4Å: Chain B: V.118, D.120, D.123 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:V.118 BA.7: 1 residues within 4Å: Chain B: E.212 No protein-ligand interaction detected (PLIP)

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: W.117, V.118, N.119, D.120 Ligands: BA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.120 GOL.4: 2 residues within 4Å: Chain A: C.408, V.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.408, A:V.409 GOL.5: 2 residues within 4Å: Chain A: S.39, K.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.44, A:K.44 GOL.8: 5 residues within 4Å: Chain B: W.117, V.118, N.119, D.120 Ligands: BA.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.120 GOL.9: 2 residues within 4Å: Chain B: C.408, V.409 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.408, B:V.409 GOL.10: 2 residues within 4Å: Chain B: S.39, K.44 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.44, B:K.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, A. et al., Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins. Elife (2017)

Release Date

2017-04-19

Peptides

Legionella pneumophila effector protein RavZ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Legionella pneumophila effector protein RavZ