SMTL ID : 5mse.1

GFP nuclear transport receptor mimic 3B8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-tetramer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: T.61, T.64, F.100, T.167, H.169, A.179, H.181 Ligands: NA.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.64, A:T.167 Water bridges: A:T.64 NA.2: 8 residues within 4Å: Chain A: P.60, T.61, L.62, V.63, T.64, F.145, H.169 Ligands: NA.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.63, A:T.64, A:T.64 Water bridges: A:T.65 NA.5: 8 residues within 4Å: Chain B: T.61, T.64, F.100, T.167, H.169, A.179, H.181 Ligands: NA.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.64, B:T.167 NA.6: 8 residues within 4Å: Chain B: P.60, T.61, L.62, V.63, T.64, F.145, H.169 Ligands: NA.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.61, B:V.63, B:T.64 Water bridges: B:T.65 NA.8: 8 residues within 4Å: Chain C: T.61, T.64, F.100, T.167, H.169, A.179, H.181 Ligands: NA.9 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.61, C:T.64 Water bridges: C:T.64 NA.9: 8 residues within 4Å: Chain C: P.60, T.61, L.62, V.63, T.64, F.145, H.169 Ligands: NA.8 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.61, C:V.63, C:T.64 Water bridges: C:T.65 NA.10: 8 residues within 4Å: Chain D: P.60, T.61, L.62, V.63, T.64, F.145, H.169 Ligands: NA.11 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:P.60, D:V.63, D:T.64 Water bridges: D:T.65 NA.11: 8 residues within 4Å: Chain D: T.61, T.64, F.100, T.167, H.169, A.179, H.181 Ligands: NA.10 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.61, D:T.64 Water bridges: D:T.64

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 7 residues within 4Å: Chain A: N.144, F.145, N.146, N.170 Chain C: E.101, E.176, V.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.146, A:N.170 Water bridges: A:N.144 IMD.4: 7 residues within 4Å: Chain A: E.101, E.176, V.178 Chain B: N.144, F.145, N.146, N.170 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.170, A:E.176 Water bridges: B:N.144, B:N.144, B:N.146, B:N.146, A:E.176 IMD.7: 7 residues within 4Å: Chain B: E.101, E.176, V.178 Chain D: N.144, F.145, N.146, N.170 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.146, D:N.170 Water bridges: D:N.144, D:N.146 IMD.12: 7 residues within 4Å: Chain C: N.144, F.145, N.146, N.170 Chain D: E.101, E.176, V.178 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.146, C:N.170 Water bridges: C:N.144, C:N.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frey, S. et al., Surface Properties Determining Passage Rates of Proteins through Nuclear Pores. Cell (2018)

Release Date

2018-05-02

Peptides

Green fluorescent protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
B

Green fluorescent protein