SMTL ID : 5mst.1 (1 other biounit)

Structure of the A domain of carboxylic acid reductase (CAR) from Segniliparus rugosus in complex with AMP and a co-purified carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: Y.203, D.234 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:Y.203, A:D.234, H2O.17, H2O.23, H2O.24 CA.2: 2 residues within 4Å: Chain A: A.494, F.497 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.494, A:F.497, H2O.11, H2O.23, H2O.25

1 x FUM: FUMARIC ACID(Non-covalent)

FUM.3: 14 residues within 4Å: Chain A: W.290, F.294, H.315, V.316, S.408, G.430, Y.431, G.432, S.433, T.434, G.437, P.438, K.629 Ligands: AMP.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.437 Water bridges: A:Y.431 Salt bridges: A:H.315, A:K.629

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.4: 16 residues within 4Å: Chain A: H.315, G.407, S.408, A.409, P.410, D.429, G.430, Y.431, G.432, S.433, T.434, D.507, Y.519, R.522, K.629 Ligands: FUM.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.408, A:D.429, A:G.432, A:T.434, A:T.434, A:T.434, A:D.507, A:K.629 Water bridges: A:M.411, A:S.433, A:S.433 Salt bridges: A:H.315, A:K.629 pi-Stacking: A:Y.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gahloth, D. et al., Structures of carboxylic acid reductase reveal domain dynamics underlying catalysis. Nat. Chem. Biol. (2017)

Release Date

2017-07-05

Peptides

Thioester reductase domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thioester reductase domain-containing protein

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