SMTL ID : 5mt6.1

Structure of E.coli GlpG in complex with peptide derived inhibitor Ac-RVRHA-phenylethyl-ketoamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x ACE- ARG- VAL- ARG- HIS- ALA- V9C: ACE-ARG-VAL-ARG-HIS-ALA-V9C(Non-covalent)

ACE-ARG-VAL-ARG-HIS-ALA-V9C.1: 21 residues within 4Å: Chain A: M.30, F.56, H.60, F.63, N.64, Q.99, S.103, W.106, F.107, G.108, G.109, L.110, S.111, Y.115, W.146, F.155, M.157, S.158, M.159, A.160, H.164 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:F.56, A:F.56, A:F.63, A:Y.115, A:F.155, A:A.160 Hydrogen bonds: A:F.56, A:N.64, A:S.103, A:W.106, A:G.108, A:G.108, A:G.108, A:S.111, A:S.158, A:S.158, A:M.159, A:A.160, A:H.164 Water bridges: A:Q.99, A:S.158, A:N.161 pi-Stacking: A:W.146

2 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)(Non-functional Binders)

BNG.2: 1 residues within 4Å: Chain A: W.46 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.46, A:W.46, A:W.46, A:W.46 BNG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ticha, A. et al., General and Modular Strategy for Designing Potent, Selective, and Pharmacologically Compliant Inhibitors of Rhomboid Proteases. Cell Chem Biol (2017)

Release Date

2017-11-15

Peptides

Rhomboid protease GlpG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Rhomboid protease GlpG

Related Entries With Identical Sequence