SMTL ID : 5mtz.2 (1 other biounit)

Crystal structure of a long form RNase Z from yeast

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.576, H.578, H.706, D.735 Ligands: ZN.2, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.576, A:H.578, A:H.706, A:D.735 ZN.2: 6 residues within 4Å: Chain A: D.580, H.581, D.735, H.795 Ligands: ZN.1, PO4.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.580, A:H.581, A:D.735, A:D.735, A:H.795

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: S.511, H.578, D.580, H.706, D.735, K.771, H.773, H.795 Ligands: ZN.1, ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.512, A:D.580 Salt bridges: A:H.578, A:H.706, A:H.773, A:H.795

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, M. et al., The crystal structure of Trz1, the long form RNase Z from yeast. Nucleic Acids Res. (2017)

Release Date

2017-06-21

Peptides

Ribonuclease Z: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ribonuclease Z

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