SMTL ID : 5muj.1

BT0996 RGII Chain B Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x XXM- RAM- 8OQ- GAL- ARA- RAM- RAM- 8PK: alpha-L-rhamnopyranose-(1-2)-[alpha-L-rhamnopyranose-(1-3)]alpha-L-arabinopyranose-(1-4)-[4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucopyranose-(1-2)]beta-D-galactopyranose-(1-2)-alpha-D-aceric acid-(1-4)-alpha-L-rhamnopyranose-(1-3)-3-C-(hydroxylmethyl)-alpha-D-erythrofuranose

XXM-RAM-8OQ-GAL-ARA-RAM-RAM-8PK.1: 19 residues within 4Å: Chain A: D.61, G.84, Y.158, E.159, A.160, V.161, L.203, T.204, Y.206, G.229, K.238, E.240, I.270, A.290, F.291, F.331, H.333, K.334, R.357 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.238 Hydrophobic interactions: A:A.160, A:T.204, A:Y.158 Hydrogen bonds: A:Y.206, A:K.238, A:K.238, A:E.240, A:E.240 Water bridges: A:L.203, A:E.240

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.181, W.182, E.183 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.183 Hydrogen bonds: A:W.182, A:E.183 Water bridges: A:S.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ndeh, D. et al., Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature (2017)

Release Date

2017-04-05

Peptides

Beta-galactosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-galactosidase

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