SMTL ID : 5mv0.2 (1 other biounit)

Structure of an N-terminal domain of a reptarenavirus L protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: S.67, N.69, M.70, H.84 Chain B: K.116, S.119 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:S.119, B:S.119, A:S.67, A:N.69 Water bridges: B:R.107, B:K.116, A:N.69, A:H.84 Salt bridges: B:K.116, A:H.84 PO4.2: 6 residues within 4Å: Chain A: K.116, S.119 Chain B: S.67, N.69, M.70, H.84 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:S.119, B:S.67, B:S.67, B:N.69 Water bridges: A:R.107, A:R.107, A:R.107, A:R.107, B:N.69 Salt bridges: A:K.116, B:H.84 PO4.3: 6 residues within 4Å: Chain C: S.67, N.69, M.70, H.84 Chain D: K.116, S.119 12 PLIP interactions: 4 interactions with chain C, 8 interactions with chain D Hydrogen bonds: C:S.67, C:N.69, D:S.119, D:S.119, D:S.119 Water bridges: C:I.85, D:R.107, D:R.107, D:R.107, D:R.107 Salt bridges: C:H.84, D:K.116 PO4.4: 5 residues within 4Å: Chain C: K.116, S.119 Chain D: S.67, N.69, H.84 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:S.119, D:S.67, D:N.69 Water bridges: C:R.107, C:R.107, C:R.107, C:R.107, C:R.107, D:N.69 Salt bridges: C:K.116, D:H.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenthal, M. et al., Structural insights into reptarenavirus cap-snatching machinery. PLoS Pathog. (2017)

Release Date

2017-05-17

Peptides

L protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
A

D
C

L protein

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