SMTL ID : 5mv8.1

Structure of human Myosin 7b C-terminal MyTH4-FERM domain in complex with harmonin-a PDZ3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.395, K.397, D.398, K.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.395, A:D.398, A:K.399 GOL.2: 4 residues within 4Å: Chain A: R.169, R.170, G.171, K.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.171, A:K.172, A:K.172, A:K.172 Water bridges: A:T.168 GOL.3: 3 residues within 4Å: Chain A: S.247, W.248, E.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.247, A:W.248, A:E.249 GOL.4: 5 residues within 4Å: Chain A: Q.427, P.431, Y.433, P.434, D.435 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.427, A:P.434, A:D.435, A:D.435 GOL.5: 3 residues within 4Å: Chain A: N.375, R.378, K.452 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.375 Water bridges: A:P.451, A:T.453 GOL.7: 6 residues within 4Å: Chain A: P.217, K.256, V.261, Y.300, M.302 Chain B: T.128 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.128, B:T.128

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, I.M. et al., Myosin 7 and its adaptors link cadherins to actin. Nat Commun (2017)

Release Date

2017-07-05

Peptides

Unconventional myosin-VIIb: A
cDNA FLJ51329, highly similar to Harmonin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Unconventional myosin-VIIb

cDNA FLJ51329, highly similar to Harmonin

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