SMTL ID : 5mw1.1

cryoEM structure of crenactin double helical filament at 3.8A resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.80 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: F.18, G.19, T.20, S.21, Y.22, K.24, Q.164, G.183, H.184, G.185, E.235, K.238, R.239, G.354, A.355, S.357, W.358, Q.399 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:F.18, A:T.20, A:T.20, A:T.20, A:S.21, A:S.21, A:S.21, A:Y.22, A:Y.22, A:Q.164, A:H.184, A:H.184, A:G.185, A:E.235, A:K.238, A:R.239, A:G.354, A:S.357 Salt bridges: A:K.24, A:K.24 pi-Stacking: A:W.358, A:W.358 ADP.2: 18 residues within 4Å: Chain B: F.18, G.19, T.20, S.21, Y.22, K.24, Q.164, G.183, H.184, G.185, E.235, K.238, R.239, G.354, A.355, S.357, W.358, Q.399 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:F.18, B:T.20, B:T.20, B:T.20, B:S.21, B:S.21, B:S.21, B:Y.22, B:Y.22, B:Q.164, B:H.184, B:H.184, B:G.185, B:E.235, B:K.238, B:R.239, B:G.354, B:S.357 Salt bridges: B:K.24, B:K.24 pi-Stacking: B:W.358, B:W.358 ADP.3: 18 residues within 4Å: Chain C: F.18, G.19, T.20, S.21, Y.22, K.24, Q.164, G.183, H.184, G.185, E.235, K.238, R.239, G.354, A.355, S.357, W.358, Q.399 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:F.18, C:T.20, C:T.20, C:T.20, C:S.21, C:S.21, C:S.21, C:Y.22, C:Y.22, C:Q.164, C:H.184, C:H.184, C:G.185, C:E.235, C:K.238, C:R.239, C:G.354, C:S.357 Salt bridges: C:K.24, C:K.24 pi-Stacking: C:W.358, C:W.358 ADP.4: 18 residues within 4Å: Chain D: F.18, G.19, T.20, S.21, Y.22, K.24, Q.164, G.183, H.184, G.185, E.235, K.238, R.239, G.354, A.355, S.357, W.358, Q.399 22 PLIP interactions: 22 interactions with chain D Hydrogen bonds: D:F.18, D:T.20, D:T.20, D:T.20, D:S.21, D:S.21, D:S.21, D:Y.22, D:Y.22, D:Q.164, D:H.184, D:H.184, D:G.185, D:E.235, D:K.238, D:R.239, D:G.354, D:S.357 Salt bridges: D:K.24, D:K.24 pi-Stacking: D:W.358, D:W.358 ADP.5: 18 residues within 4Å: Chain E: F.18, G.19, T.20, S.21, Y.22, K.24, Q.164, G.183, H.184, G.185, E.235, K.238, R.239, G.354, A.355, S.357, W.358, Q.399 22 PLIP interactions: 22 interactions with chain E Hydrogen bonds: E:F.18, E:T.20, E:T.20, E:T.20, E:S.21, E:S.21, E:S.21, E:Y.22, E:Y.22, E:Q.164, E:H.184, E:H.184, E:G.185, E:E.235, E:K.238, E:R.239, E:G.354, E:S.357 Salt bridges: E:K.24, E:K.24 pi-Stacking: E:W.358, E:W.358 ADP.6: 18 residues within 4Å: Chain F: F.18, G.19, T.20, S.21, Y.22, K.24, Q.164, G.183, H.184, G.185, E.235, K.238, R.239, G.354, A.355, S.357, W.358, Q.399 22 PLIP interactions: 22 interactions with chain F Hydrogen bonds: F:F.18, F:T.20, F:T.20, F:T.20, F:S.21, F:S.21, F:S.21, F:Y.22, F:Y.22, F:Q.164, F:H.184, F:H.184, F:G.185, F:E.235, F:K.238, F:R.239, F:G.354, F:S.357 Salt bridges: F:K.24, F:K.24 pi-Stacking: F:W.358, F:W.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izore, T. et al., Crenactin forms actin-like double helical filaments regulated by arcadin-2. Elife (2016)

Release Date

2017-02-08

Peptides

Actin/actin family protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

E
E

F
F

Actin/actin family protein

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