SMTL ID : 5mwb.1

Human Notch-2 EGF11-13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x BGC- XYP: beta-D-xylopyranose-(1-3)-beta-D-glucopyranose(Post Translational Modification)

BGC-XYP.1: 8 residues within 4Å: Chain A: K.33, E.46, S.49, P.51, G.63, G.64, F.65, H.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.33, A:K.33

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.2: 4 residues within 4Å: Chain A: T.57, L.68, C.69, M.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.57

1 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.3: 4 residues within 4Å: Chain A: E.84, S.87, P.89, F.103 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.87

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: E.81, I.82, E.84, D.98, K.99 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.81, A:I.82, A:E.84, A:K.99, H2O.1 CA.5: 6 residues within 4Å: Chain A: D.2, V.3, E.5, N.22, T.23, A.26 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.2, A:V.3, A:T.23, A:A.26, H2O.1 CA.6: 5 residues within 4Å: Chain A: D.43, I.44, E.46, D.60, K.61 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.43, A:D.60, A:D.60, A:K.61, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suckling, R.J. et al., Structural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands. EMBO J. (2017)

Release Date

2017-06-14

Peptides

Neurogenic locus notch homolog protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neurogenic locus notch homolog protein 2