SMTL ID : 5mx0.2 (1 other biounit)

Crystal structure of human fibromodulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

4 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 4 residues within 4Å: Chain A: D.61, P.90, S.91, N.113 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.2: 4 residues within 4Å: Chain A: Q.126, T.128, N.152, Q.173 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.3: 5 residues within 4Å: Chain A: H.142, R.162, S.163, R.165, N.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.165, A:H.142 NAG-NAG-BMA-FUC.4: 8 residues within 4Å: Chain A: R.251, N.277, P.296, N.298, S.317, S.318, T.321, V.322 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.251, A:R.251, A:N.274

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: H.171, H.195 Ligands: NI.6 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.6: 3 residues within 4Å: Chain A: H.171, H.195 Ligands: CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.171, A:H.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paracuellos, P. et al., Structural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin. Matrix Biol. (2017)

Release Date

2017-03-01

Peptides

Fibromodulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fibromodulin

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