- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x HPA: HYPOXANTHINE(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 8 residues within 4Å:- Chain A: C.19, G.20, D.21, R.24, R.87, G.89, T.90
- Chain F: R.43
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:G.20, A:D.21, A:T.90
- Salt bridges: A:R.24, A:R.87, F:R.43
PO4.12: 8 residues within 4Å:- Chain B: C.19, G.20, D.21, R.24, R.87, G.89, T.90
- Chain E: R.43
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:G.20, B:D.21, B:T.90
- Salt bridges: B:R.24, B:R.87, E:R.43
PO4.22: 8 residues within 4Å:- Chain C: C.19, G.20, D.21, R.24, R.87, G.89, T.90
- Chain D: R.43
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:G.20, C:D.21, C:T.90
- Salt bridges: C:R.24, C:R.87, D:R.43
PO4.32: 8 residues within 4Å:- Chain C: R.43
- Chain D: C.19, G.20, D.21, R.24, R.87, G.89, T.90
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:G.20, D:D.21, D:T.90
- Salt bridges: D:R.24, D:R.87, C:R.43
PO4.42: 8 residues within 4Å:- Chain B: R.43
- Chain E: C.19, G.20, D.21, R.24, R.87, G.89, T.90
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:G.20, E:D.21, E:T.90
- Salt bridges: E:R.24, E:R.87, B:R.43
PO4.52: 8 residues within 4Å:- Chain A: R.43
- Chain F: C.19, G.20, D.21, R.24, R.87, G.89, T.90
6 PLIP interactions:5 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: F:G.20, F:D.21, F:T.90
- Salt bridges: F:R.24, F:R.87, A:R.43
- 48 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.3: 6 residues within 4Å:- Chain A: K.78, E.191, L.192
- Chain F: Y.160, S.161, F.162
Ligand excluded by PLIPPG4.4: 3 residues within 4Å:- Chain F: M.1, K.8
- Ligands: PG4.7
Ligand excluded by PLIPPG4.5: 5 residues within 4Å:- Chain A: E.163, H.165, A.166, L.169, Q.172
Ligand excluded by PLIPPG4.6: 4 residues within 4Å:- Chain A: K.101, L.212, E.216, S.220
Ligand excluded by PLIPPG4.7: 8 residues within 4Å:- Chain A: L.23, P.214, K.215
- Chain F: M.1, N.6, A.7, N.41
- Ligands: PG4.4
Ligand excluded by PLIPPG4.8: 8 residues within 4Å:- Chain A: P.96, K.97, V.98, G.99, D.102, D.147, K.149, H.205
Ligand excluded by PLIPPG4.9: 10 residues within 4Å:- Chain A: K.101, I.103, I.146, D.147, S.201, S.220, F.221, D.222, N.223, M.224
Ligand excluded by PLIPPG4.10: 9 residues within 4Å:- Chain A: D.112, E.163
- Chain D: L.121, N.122, H.123
- Chain F: K.114, R.117, V.118, N.122
Ligand excluded by PLIPPG4.13: 6 residues within 4Å:- Chain B: K.78, E.191, L.192
- Chain E: Y.160, S.161, F.162
Ligand excluded by PLIPPG4.14: 3 residues within 4Å:- Chain E: M.1, K.8
- Ligands: PG4.17
Ligand excluded by PLIPPG4.15: 5 residues within 4Å:- Chain B: E.163, H.165, A.166, L.169, Q.172
Ligand excluded by PLIPPG4.16: 4 residues within 4Å:- Chain B: K.101, L.212, E.216, S.220
Ligand excluded by PLIPPG4.17: 8 residues within 4Å:- Chain B: L.23, P.214, K.215
- Chain E: M.1, N.6, A.7, N.41
- Ligands: PG4.14
Ligand excluded by PLIPPG4.18: 8 residues within 4Å:- Chain B: P.96, K.97, V.98, G.99, D.102, D.147, K.149, H.205
Ligand excluded by PLIPPG4.19: 10 residues within 4Å:- Chain B: K.101, I.103, I.146, D.147, S.201, S.220, F.221, D.222, N.223, M.224
Ligand excluded by PLIPPG4.20: 9 residues within 4Å:- Chain B: D.112, E.163
- Chain E: K.114, R.117, V.118, N.122
- Chain F: L.121, N.122, H.123
Ligand excluded by PLIPPG4.23: 6 residues within 4Å:- Chain C: K.78, E.191, L.192
- Chain D: Y.160, S.161, F.162
Ligand excluded by PLIPPG4.24: 3 residues within 4Å:- Chain D: M.1, K.8
- Ligands: PG4.27
Ligand excluded by PLIPPG4.25: 5 residues within 4Å:- Chain C: E.163, H.165, A.166, L.169, Q.172
Ligand excluded by PLIPPG4.26: 4 residues within 4Å:- Chain C: K.101, L.212, E.216, S.220
Ligand excluded by PLIPPG4.27: 8 residues within 4Å:- Chain C: L.23, P.214, K.215
- Chain D: M.1, N.6, A.7, N.41
- Ligands: PG4.24
Ligand excluded by PLIPPG4.28: 8 residues within 4Å:- Chain C: P.96, K.97, V.98, G.99, D.102, D.147, K.149, H.205
Ligand excluded by PLIPPG4.29: 10 residues within 4Å:- Chain C: K.101, I.103, I.146, D.147, S.201, S.220, F.221, D.222, N.223, M.224
Ligand excluded by PLIPPG4.30: 9 residues within 4Å:- Chain C: D.112, E.163
- Chain D: K.114, R.117, V.118, N.122
- Chain E: L.121, N.122, H.123
Ligand excluded by PLIPPG4.33: 6 residues within 4Å:- Chain C: Y.160, S.161, F.162
- Chain D: K.78, E.191, L.192
Ligand excluded by PLIPPG4.34: 3 residues within 4Å:- Chain C: M.1, K.8
- Ligands: PG4.37
Ligand excluded by PLIPPG4.35: 5 residues within 4Å:- Chain D: E.163, H.165, A.166, L.169, Q.172
Ligand excluded by PLIPPG4.36: 4 residues within 4Å:- Chain D: K.101, L.212, E.216, S.220
Ligand excluded by PLIPPG4.37: 8 residues within 4Å:- Chain C: M.1, N.6, A.7, N.41
- Chain D: L.23, P.214, K.215
- Ligands: PG4.34
Ligand excluded by PLIPPG4.38: 8 residues within 4Å:- Chain D: P.96, K.97, V.98, G.99, D.102, D.147, K.149, H.205
Ligand excluded by PLIPPG4.39: 10 residues within 4Å:- Chain D: K.101, I.103, I.146, D.147, S.201, S.220, F.221, D.222, N.223, M.224
Ligand excluded by PLIPPG4.40: 9 residues within 4Å:- Chain A: L.121, N.122, H.123
- Chain C: K.114, R.117, V.118, N.122
- Chain D: D.112, E.163
Ligand excluded by PLIPPG4.43: 6 residues within 4Å:- Chain B: Y.160, S.161, F.162
- Chain E: K.78, E.191, L.192
Ligand excluded by PLIPPG4.44: 3 residues within 4Å:- Chain B: M.1, K.8
- Ligands: PG4.47
Ligand excluded by PLIPPG4.45: 5 residues within 4Å:- Chain E: E.163, H.165, A.166, L.169, Q.172
Ligand excluded by PLIPPG4.46: 4 residues within 4Å:- Chain E: K.101, L.212, E.216, S.220
Ligand excluded by PLIPPG4.47: 8 residues within 4Å:- Chain B: M.1, N.6, A.7, N.41
- Chain E: L.23, P.214, K.215
- Ligands: PG4.44
Ligand excluded by PLIPPG4.48: 8 residues within 4Å:- Chain E: P.96, K.97, V.98, G.99, D.102, D.147, K.149, H.205
Ligand excluded by PLIPPG4.49: 10 residues within 4Å:- Chain E: K.101, I.103, I.146, D.147, S.201, S.220, F.221, D.222, N.223, M.224
Ligand excluded by PLIPPG4.50: 9 residues within 4Å:- Chain B: K.114, R.117, V.118, N.122
- Chain C: L.121, N.122, H.123
- Chain E: D.112, E.163
Ligand excluded by PLIPPG4.53: 6 residues within 4Å:- Chain A: Y.160, S.161, F.162
- Chain F: K.78, E.191, L.192
Ligand excluded by PLIPPG4.54: 3 residues within 4Å:- Chain A: M.1, K.8
- Ligands: PG4.57
Ligand excluded by PLIPPG4.55: 5 residues within 4Å:- Chain F: E.163, H.165, A.166, L.169, Q.172
Ligand excluded by PLIPPG4.56: 4 residues within 4Å:- Chain F: K.101, L.212, E.216, S.220
Ligand excluded by PLIPPG4.57: 8 residues within 4Å:- Chain A: M.1, N.6, A.7, N.41
- Chain F: L.23, P.214, K.215
- Ligands: PG4.54
Ligand excluded by PLIPPG4.58: 8 residues within 4Å:- Chain F: P.96, K.97, V.98, G.99, D.102, D.147, K.149, H.205
Ligand excluded by PLIPPG4.59: 10 residues within 4Å:- Chain F: K.101, I.103, I.146, D.147, S.201, S.220, F.221, D.222, N.223, M.224
Ligand excluded by PLIPPG4.60: 9 residues within 4Å:- Chain A: K.114, R.117, V.118, N.122
- Chain B: L.121, N.122, H.123
- Chain F: D.112, E.163
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori. Int. J. Biol. Macromol. (2017)
- Release Date
- 2017-04-05
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x HPA: HYPOXANTHINE(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 48 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori. Int. J. Biol. Macromol. (2017)
- Release Date
- 2017-04-05
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A