SMTL ID : 5mym.2 (1 other biounit)

Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with compound GSK2032710A at 2.28A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

1 x HYV: [4-(phenylmethyl)piperidin-1-yl]-[1-(5-pyrrol-1-yl-1,3,4-thiadiazol-2-yl)piperidin-4-yl]methanone(Non-covalent)

HYV.1: 19 residues within 4Å: Chain A: G.110, I.111, F.114, F.118, G.128, Q.129, R.132, W.142, M.146, W.149, Y.152, T.153, N.180, N.183, E.184, L.187, F.188, W.211 Ligands: EDO.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.111, A:F.114, A:F.114, A:F.114, A:F.118, A:R.132, A:W.142, A:Y.152, A:N.180, A:N.183, A:L.187, A:W.211, A:W.211, A:W.211 pi-Stacking: A:W.142, A:W.142

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.158, P.171, A.172, H.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.158, A:R.161, A:A.172, A:H.173 EDO.3: 7 residues within 4Å: Chain A: Q.129, R.132, E.184, R.185, F.188 Chain B: R.185 Ligands: HYV.1 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.184, A:R.185 Water bridges: A:R.185, A:E.194, A:E.194, B:E.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mugumbate, G. et al., Target Identification of Mycobacterium tuberculosis Phenotypic Hits Using a Concerted Chemogenomic, Biophysical, and Structural Approach. Front Pharmacol (2017)

Release Date

2017-10-25

Peptides

HTH-type transcriptional regulator EthR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HTH-type transcriptional regulator EthR

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