- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HBF: ferrocene homobiotin derivative(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 7 residues within 4Å:- Chain A: K.9, G.15, N.17, T.34, T.35, A.36, L.123
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.36
- Hydrogen bonds: A:K.9, A:G.15
- Water bridges: A:N.17, A:N.17
NAG.8: 5 residues within 4Å:- Chain B: K.9, G.15, N.17, T.34, L.123
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:T.34
- Hydrogen bonds: B:K.9, B:G.15
NAG.16: 3 residues within 4Å:- Chain C: G.15, N.17, T.34
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:T.34
- Hydrogen bonds: C:G.15
- Water bridges: C:N.17
NAG.23: 5 residues within 4Å:- Chain D: K.9, G.15, N.17, T.34, L.123
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:T.34
- Hydrogen bonds: D:K.9, D:G.15
- 21 x IOD: IODIDE ION(Non-functional Binders)
IOD.3: 2 residues within 4Å:- Chain A: S.102
- Ligands: HBF.1
Ligand excluded by PLIPIOD.4: 4 residues within 4Å:- Chain A: G.89, K.90, E.91, R.122
Ligand excluded by PLIPIOD.5: 2 residues within 4Å:- Chain A: K.9, R.122
Ligand excluded by PLIPIOD.6: 4 residues within 4Å:- Chain A: T.32, E.46, S.47, P.48
Ligand excluded by PLIPIOD.9: 2 residues within 4Å:- Chain B: R.2, E.91
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain B: S.102
- Ligands: HBF.7
Ligand excluded by PLIPIOD.11: 2 residues within 4Å:- Chain B: K.111
- Chain D: R.114
Ligand excluded by PLIPIOD.12: 5 residues within 4Å:- Chain B: N.17, M.18, T.19, T.32, T.34
Ligand excluded by PLIPIOD.13: 3 residues within 4Å:- Chain B: T.32, S.47, P.48
Ligand excluded by PLIPIOD.14: 1 residues within 4Å:- Chain B: R.2
Ligand excluded by PLIPIOD.17: 2 residues within 4Å:- Chain A: K.111
- Chain C: R.114
Ligand excluded by PLIPIOD.18: 2 residues within 4Å:- Chain A: R.114
- Chain C: K.111
Ligand excluded by PLIPIOD.19: 1 residues within 4Å:- Chain C: S.102
Ligand excluded by PLIPIOD.20: 4 residues within 4Å:- Chain C: T.32, E.46, S.47, P.48
Ligand excluded by PLIPIOD.21: 2 residues within 4Å:- Chain C: K.9, R.122
Ligand excluded by PLIPIOD.24: 2 residues within 4Å:- Chain B: R.114
- Chain D: K.111
Ligand excluded by PLIPIOD.25: 4 residues within 4Å:- Chain D: S.75, S.101, S.102
- Ligands: HBF.22
Ligand excluded by PLIPIOD.26: 1 residues within 4Å:- Chain D: R.2
Ligand excluded by PLIPIOD.27: 4 residues within 4Å:- Chain D: M.18, T.19, T.32, T.34
Ligand excluded by PLIPIOD.28: 2 residues within 4Å:- Chain D: R.2, E.91
Ligand excluded by PLIPIOD.29: 3 residues within 4Å:- Chain D: E.46, S.47, P.48
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strzelczyk, P. et al., Structural investigation of the interactions of ferrocene homobiotin derivative with avidin. To Be Published
- Release Date
- 2018-02-14
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HBF: ferrocene homobiotin derivative(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 21 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strzelczyk, P. et al., Structural investigation of the interactions of ferrocene homobiotin derivative with avidin. To Be Published
- Release Date
- 2018-02-14
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D