SMTL ID : 5myv.4 (3 other biounits)

Crystal structure of SRPK2 in complex with compound 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.123, H.124, K.127 Ligands: W4A.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.124 Salt bridges: A:H.123, A:H.124, A:K.127 SO4.2: 6 residues within 4Å: Chain A: G.42, H.43, F.44, S.45, K.62, D.231 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.43, A:F.44, A:S.45, A:D.231 Water bridges: A:K.62 Salt bridges: A:K.62 SO4.3: 3 residues within 4Å: Chain A: R.249, R.252, R.295 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.249, A:R.252, A:R.295 SO4.4: 4 residues within 4Å: Chain A: S.377, G.379, E.380, R.383 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.377 Salt bridges: A:R.383 SO4.5: 3 residues within 4Å: Chain A: H.288, S.289, R.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.289, A:S.289 Salt bridges: A:R.295 SO4.6: 5 residues within 4Å: Chain A: S.66, G.108, M.109, N.110, H.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.66, A:S.66, A:M.109, A:N.110, A:N.110 Salt bridges: A:H.113 SO4.7: 1 residues within 4Å: Chain A: K.82 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.82 SO4.8: 1 residues within 4Å: Chain A: H.239 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.239 SO4.9: 3 residues within 4Å: Chain A: N.326, R.327, R.332 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.327 Salt bridges: A:R.332

1 x W4A: 5-methyl-~{N}-[2-(4-methylpiperazin-1-yl)-5-(trifluoromethyl)phenyl]furan-2-carboxamide(Non-covalent)

W4A.10: 14 residues within 4Å: Chain A: L.39, G.40, W.41, F.118, E.119, V.120, L.121, G.122, H.123, V.176, Y.180, M.184 Ligands: SO4.1, DMS.11 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.39, A:F.118, A:L.121 Hydrogen bonds: A:L.121, A:G.122 pi-Stacking: A:H.123

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.11: 7 residues within 4Å: Chain A: E.77, V.98, F.118, A.230, D.231, L.232 Ligands: W4A.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.77, A:D.231 Salt bridges: A:E.77, A:D.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batson, J. et al., Development of Potent, Selective SRPK1 Inhibitors as Potential Topical Therapeutics for Neovascular Eye Disease. ACS Chem. Biol. (2017)

Release Date

2017-05-10

Peptides

SRSF protein kinase 2,SRSF protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

SRSF protein kinase 2,SRSF protein kinase 2

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