SMTL ID : 5n0g.1

Crystal Structure of CobH T85A (precorrin-8x methyl mutase) complexed with C5 allyl-HBA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

2 x 8F5: 3-[(1~{R},2~{S},3~{S},4~{Z},7~{S},8~{S},9~{Z},15~{R},17~{R},18~{R},19~{R})-2,7,18-tris(2-hydroxy-2-oxoethyl)-3,13,17-tris(3-hydroxy-3-oxopropyl)-1,2,7,12,12,15,17-heptamethyl-5-prop-2-enyl-3,8,15,18,19,21-hexahydrocorrin-8-yl]propanoic acid(Non-covalent)

8F5.1: 30 residues within 4Å: Chain A: G.8, I.11, Y.12, S.15, R.38, H.41, A.42, G.82, A.84, A.194, V.197, A.198, N.201 Chain B: A.76, R.77, M.78, L.98, T.113, R.114, S.115, N.135, A.136, P.137, T.138, V.163, G.164, F.165, I.166, G.192, S.193 30 PLIP interactions: 11 interactions with chain A, 19 interactions with chain B Hydrophobic interactions: A:Y.12, A:Y.12, A:A.84, A:V.197, B:L.98, B:T.113, B:A.136 Hydrogen bonds: A:Y.12, A:S.15, A:N.201, B:R.77, B:M.78, B:R.114, B:S.115, B:S.115, B:N.135, B:T.138, B:F.165, B:I.166, B:S.193 Water bridges: A:H.41, A:A.42, B:R.114, B:R.114, B:G.191, B:A.194 Salt bridges: A:R.38, A:H.41, B:R.114, B:R.114 8F5.3: 30 residues within 4Å: Chain A: A.76, R.77, M.78, L.98, T.113, R.114, S.115, N.135, A.136, P.137, T.138, V.163, G.164, F.165, I.166, G.192, S.193 Chain B: G.8, I.11, Y.12, S.15, R.38, H.41, A.42, G.82, A.84, A.194, V.197, A.198, N.201 30 PLIP interactions: 11 interactions with chain B, 19 interactions with chain A Hydrophobic interactions: B:Y.12, B:Y.12, B:A.84, B:V.197, A:L.98, A:T.113, A:A.136 Hydrogen bonds: B:Y.12, B:Y.12, B:S.15, B:N.201, A:R.77, A:M.78, A:R.114, A:S.115, A:S.115, A:N.135, A:T.138, A:F.165, A:I.166, A:S.193 Water bridges: B:A.42, A:R.114, A:R.114, A:G.191, A:A.194 Salt bridges: B:R.38, B:H.41, A:R.114, A:R.114

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.77, V.94, I.95, C.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.77, A:R.77, A:C.96 Water bridges: A:V.94 GOL.4: 4 residues within 4Å: Chain B: R.77, V.94, I.95, C.96 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.77, B:R.77, B:C.96 Water bridges: B:V.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawrence, A.D. et al., Novel cobalamin analogues and their application in the trafficking of cobalamin in bacteria, worms and plants. To Be Published

Release Date

2018-02-14

Peptides

Precorrin-8X methylmutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Precorrin-8X methylmutase