SMTL ID : 5n16.1 (3 other biounits)

First Bromodomain (BD1) from Candida albicans Bdf1 bound to a dibenzothiazepinone (compound 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

2 x 8FN: 5-cyclopropyl-2-(5-pyrazin-2-yl-1,2,4-oxadiazol-3-yl)benzo[b][1,4]benzothiazepin-6-one(Non-covalent)

8FN.1: 10 residues within 4Å: Chain A: P.44, F.45, V.49, L.54, V.56, C.98, F.101, N.102, I.108 Ligands: 8FN.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.44, A:F.45, A:L.54, A:L.54, A:V.56, A:F.101, A:I.108 Hydrogen bonds: A:N.102 8FN.4: 6 residues within 4Å: Chain A: P.48, V.49, D.50, K.53, L.54 Ligands: 8FN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.54 Hydrogen bonds: A:D.50 Water bridges: A:K.53 pi-Cation interactions: A:K.53

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: G.3, P.57 No protein-ligand interaction detected (PLIP) NI.3: 2 residues within 4Å: Chain A: P.128, K.129 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mietton, F. et al., Selective BET bromodomain inhibition as an antifungal therapeutic strategy. Nat Commun (2017)

Release Date

2017-05-31

Peptides

Bromodomain-containing factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing factor 1

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