- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)
- 2 x TP7: Coenzyme B
TP7.2: 21 residues within 4Å:- Chain A: R.228, K.259, H.260
- Chain D: R.273, L.322, M.326, S.327, F.332, F.445, A.481, M.482, N.483, V.484
- Chain E: F.362, F.363, Y.368, G.369, G.370, H.380, I.381, V.382
15 PLIP interactions:3 interactions with chain D, 4 interactions with chain A, 8 interactions with chain E- Hydrophobic interactions: D:M.326, E:F.363, E:Y.368, E:I.381, E:V.382
- Water bridges: D:R.273
- Salt bridges: D:R.273, A:R.228, A:K.259, A:K.259, E:H.380
- Hydrogen bonds: A:K.259, E:Y.368, E:G.370, E:G.370
TP7.3: 21 residues within 4Å:- Chain A: R.273, L.322, M.326, S.327, F.332, F.445, A.481, M.482, N.483, V.484
- Chain B: F.362, F.363, Y.368, G.369, G.370, H.380, I.381, V.382
- Chain D: R.228, K.259, H.260
14 PLIP interactions:7 interactions with chain B, 3 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: B:F.363, B:Y.368, B:I.381, B:V.382, A:M.326, A:F.332
- Hydrogen bonds: B:Y.368, B:G.370, D:K.259
- Salt bridges: B:H.380, A:R.273, D:R.228, D:K.259, D:K.259
- 2 x F43: FACTOR 430(Non-covalent)
F43.4: 33 residues within 4Å:- Chain A: A.147, V.148, V.149, Q.150, M.153, Q.233, M.236, A.246
- Chain D: G.328, G.329, V.330, G.331, F.332, T.333, Q.334, Y.335, F.398, G.399, G.444, F.445
- Chain E: S.366, I.367, Y.368
- Chain F: L.120, S.121, G.122, R.123, A.157, T.158, V.159, H.160, H.162
- Ligands: COM.7
30 PLIP interactions:9 interactions with chain F, 13 interactions with chain D, 5 interactions with chain A, 3 interactions with chain E,- Hydrophobic interactions: F:L.120, F:V.159, D:V.330, D:F.332, D:Q.334, D:Y.335, D:Y.335, D:F.398, D:F.445, A:Q.150
- Hydrogen bonds: F:S.121, F:G.122, F:R.123, F:T.158, F:V.159, D:V.330, D:G.331, D:T.333, D:Q.334, D:Y.335, D:Y.335, A:V.148, A:V.149, A:Q.150, A:Q.233, E:I.367, E:Y.368, E:Y.368
- Salt bridges: F:H.160, F:H.162
F43.6: 33 residues within 4Å:- Chain A: G.328, G.329, V.330, G.331, F.332, T.333, Q.334, Y.335, F.398, G.399, G.444, F.445
- Chain B: S.366, I.367, Y.368
- Chain C: L.120, S.121, G.122, R.123, A.157, T.158, V.159, H.160, H.162
- Chain D: A.147, V.148, V.149, Q.150, M.153, Q.233, M.236, A.246
- Ligands: COM.1
28 PLIP interactions:9 interactions with chain C, 12 interactions with chain A, 5 interactions with chain D, 2 interactions with chain B,- Hydrophobic interactions: C:L.120, C:V.159, A:V.330, A:F.332, A:Y.335, A:Y.335, A:F.398, A:F.445, D:Q.150
- Hydrogen bonds: C:S.121, C:G.122, C:R.123, C:T.158, C:V.159, A:V.330, A:G.331, A:T.333, A:Q.334, A:Q.334, A:Y.335, D:V.148, D:V.149, D:Q.150, D:Q.233, B:I.367, B:Y.368
- Salt bridges: C:H.160, C:H.162
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wagner, T. et al., Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales. J.Bacteriol. (2017)
- Release Date
- 2017-06-14
- Peptides
- Methyl-coenzyme M reductase subunit alpha: AD
Methyl-coenzyme M reductase, beta subunit: BE
Methyl-coenzyme M reductase, gamma subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)
- 2 x TP7: Coenzyme B
- 2 x F43: FACTOR 430(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wagner, T. et al., Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales. J.Bacteriol. (2017)
- Release Date
- 2017-06-14
- Peptides
- Methyl-coenzyme M reductase subunit alpha: AD
Methyl-coenzyme M reductase, beta subunit: BE
Methyl-coenzyme M reductase, gamma subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F