SMTL ID : 5n2i.2 (1 other biounit)

F420:NADPH oxidoreductase from Thermobifida fusca with NADP+ bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 19 residues within 4Å: Chain A: G.26, T.28, G.29, D.30, Q.31, S.50, R.51, R.55, A.87, V.88, P.89, G.92, C.112, V.113, N.114, F.150, H.151, V.153, A.155 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.153 Hydrogen bonds: A:T.28, A:Q.31, A:R.51, A:R.51, A:R.55, A:V.88, A:N.114, A:N.114, A:N.114, A:A.155 Water bridges: A:G.29, A:D.30, A:D.30, A:R.51, A:R.51, A:N.74, A:W.90, A:G.92, A:V.156 Salt bridges: A:R.51, A:R.55 pi-Cation interactions: A:R.51, A:R.51 NAP.3: 19 residues within 4Å: Chain B: G.26, T.28, G.29, D.30, Q.31, S.50, R.51, R.55, A.87, V.88, P.89, G.92, C.112, V.113, N.114, F.150, H.151, V.153, A.155 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:Q.31, B:V.153 Hydrogen bonds: B:T.28, B:T.28, B:D.30, B:Q.31, B:G.32, B:R.51, B:V.88, B:W.90, B:N.114, B:N.114, B:N.114, B:A.155 Water bridges: B:G.26, B:G.26, B:G.29, B:G.92 Salt bridges: B:R.51, B:R.55 pi-Cation interactions: B:R.51, B:R.51

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.174, D.175, D.176, R.177, T.180, Y.197, R.200 Chain B: R.220 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.174, A:T.180, A:R.200, B:R.220 Water bridges: A:R.177, B:R.220 GOL.4: 9 residues within 4Å: Chain B: H.152, V.153, S.154, T.211, L.214, I.215, N.218, H.224, A.225 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.218, B:A.225 Water bridges: B:S.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, H. et al., Isolation and characterization of a thermostable F420:NADPH oxidoreductase from Thermobifida fusca. J. Biol. Chem. (2017)

Release Date

2017-04-26

Peptides

Reduced coenzyme F420:NADP oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Reduced coenzyme F420:NADP oxidoreductase

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