SMTL ID : 5n30.1

Crystal structure of the V72I mutant of the mouse alpha-Dystroglycan N-terminal region

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.196, A.197, K.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.196, A:K.198 EDO.2: 12 residues within 4Å: Chain A: L.140, F.166, S.167, E.168, V.169, W.209, L.211, P.221, D.222, I.223, V.226 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.168, A:E.168, A:W.209 EDO.3: 8 residues within 4Å: Chain A: S.167, E.168, V.169, W.209, K.210, L.211, P.221 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.210, A:K.210

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 13 residues within 4Å: Chain A: R.25, D.109, N.111, E.112, P.113, V.139, V.169, N.173, M.174, K.175, S.208, W.209, K.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.111, A:S.208, A:K.210 Water bridges: A:K.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Covaceuszach, S. et al., The effect of the pathological V72I, D109N and T190M missense mutations on the molecular structure of alpha-dystroglycan. PLoS ONE (2017)

Release Date

2017-11-01

Peptides

Dystroglycan: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dystroglycan