SMTL ID : 5n4a.1

Crystal structure of Chlamydomonas IFT80

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

13 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 14 residues within 4Å: Chain A: I.197, N.198, H.199, R.255, N.418, Q.420, M.421, L.432, Q.434, E.461, V.462, K.463, E.464, R.483 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.418, A:Q.420, A:Q.434, A:Q.434, A:E.461, A:K.463, A:R.483 Water bridges: A:R.255, A:R.255, A:R.255 GOL.2: 10 residues within 4Å: Chain A: Y.114, W.153, A.154, Y.155, D.156, W.194, S.195, P.196, H.199, S.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.114, A:Y.155, A:D.156, A:H.199 GOL.3: 6 residues within 4Å: Chain A: K.183, A.184, H.185, D.186, D.207, K.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.183, A:A.184 Water bridges: A:D.207, A:K.211 GOL.4: 5 residues within 4Å: Chain A: D.304, L.342, G.343, Y.344, D.511 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.304, A:Y.344, A:D.511 Water bridges: A:Y.344, A:Y.344, A:Y.344, A:Q.380, A:R.508, A:R.508 GOL.5: 7 residues within 4Å: Chain A: L.190, E.206, P.229, T.231, S.270, M.272 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.270 GOL.6: 6 residues within 4Å: Chain A: Y.149, V.188, L.190, E.206, M.272 Ligands: GOL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.206 GOL.7: 6 residues within 4Å: Chain A: N.390, S.391, L.412, R.413, T.414, E.415 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.414, A:T.414 Water bridges: A:S.66, A:L.412, A:E.415 GOL.8: 6 residues within 4Å: Chain A: F.369, D.370, Y.397, G.401, R.402, Q.403 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.370, A:D.370, A:Y.397, A:Y.397, A:G.401 Water bridges: A:Q.403 GOL.9: 4 residues within 4Å: Chain A: R.218, N.484, R.485, M.503 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.218, A:R.485 Water bridges: A:R.218 GOL.10: 4 residues within 4Å: Chain A: D.521, Q.522, R.523, D.551 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.522, A:R.523, A:R.523, A:D.551 Water bridges: A:Q.522, A:D.551 GOL.11: 5 residues within 4Å: Chain A: Y.346, E.382, R.383, Y.399, E.400 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.346 GOL.13: 5 residues within 4Å: Chain A: N.564, R.565, S.577, A.578, A.579 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.564, A:S.577 Water bridges: A:N.564 GOL.14: 7 residues within 4Å: Chain A: D.254, R.255, M.256, W.258, Y.260, Q.559, R.569 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.569, A:R.569 Water bridges: A:R.255, A:Y.260, A:Q.559, A:Q.559, A:Q.559

1 x OXL: OXALATE ION(Non-covalent)

OXL.12: 2 residues within 4Å: Chain A: R.569, L.575 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.569, A:R.569, A:R.569, A:R.569 Salt bridges: A:R.569, A:R.569

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taschner, M. et al., Crystal structure of intraflagellar transport protein 80 reveals a homo-dimer required for ciliogenesis. Elife (2018)

Release Date

2018-02-28

Peptides

Intraflagellar transport protein 80: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Intraflagellar transport protein 80