SMTL ID : 5n4h.1

Crystal structure of the D109N mutant of the mouse alpha-Dystroglycan N-terminal region

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: N.195, A.196, K.197, P.241 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.195 Water bridges: A:K.197, A:K.197 EDO.2: 10 residues within 4Å: Chain A: L.139, F.165, S.166, E.167, W.208, L.210, P.220, D.221, I.222, V.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.167, A:W.208 Water bridges: A:E.167

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 13 residues within 4Å: Chain A: R.24, D.108, N.110, E.111, P.112, V.138, V.168, N.172, M.173, K.174, S.207, W.208, K.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.172, A:S.207, A:K.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Covaceuszach, S. et al., The effect of the pathological V72I, D109N and T190M missense mutations on the molecular structure of alpha-dystroglycan. PLoS ONE (2017)

Release Date

2017-11-01

Peptides

Dystroglycan: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dystroglycan