SMTL ID : 5n4l.1 (1 other biounit)

Rat ceruloplasmin trigonal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

5 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.162, H.972, H.974, H.1014 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.162, A:H.974, A:H.1014, H2O.1 CU.2: 6 residues within 4Å: Chain A: L.968, H.969, C.1015, V.1017, H.1020, M.1025 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.969, A:C.1015, A:H.1020 CU.3: 5 residues within 4Å: Chain A: H.275, C.318, N.320, H.323, L.328 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.275, A:C.318, A:H.323 CU.4: 4 residues within 4Å: Chain A: H.103, I.158, H.160, H.1016 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.103, A:H.160, A:H.1016, H2O.1 CU.5: 6 residues within 4Å: Chain A: H.101, A.102, H.103, Y.107, H.972, H.974 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.101, A:H.972

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 7 residues within 4Å: Chain A: K.109, E.112, A.114, D.118, Q.124, D.127, D.128 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:K.109, A:D.127, A:D.128, A:D.128

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: Y.36, G.45, Y.48, S.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.36, A:G.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Rat ceruloplasmin: a new labile copper binding site and zinc/copper mosaic. Metallomics (2017)

Release Date

2017-12-13

Peptides

Ceruloplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ceruloplasmin

Related Entries With Identical Sequence